CapiPy is now accessible to all! Just upload your pdb file and enter your email, and in a few minutes you'll have your results!
How CapiPy Works
1
Upload Your PDB
Submit your protein structure file in PDB format. Doesn't (or shouldn't) matter if there are non-standard residues or other molecules. We'll clean it up.
2
Surface Analysis
CapiPy analyzes the protein surface to identify exposed residues. Exposure is measured based on the half sphere exposure (HSEbu is used with a radius of 16A and threshold of 25 atoms.
3
Cluster Identification
After the classification of exposed residues, we calculate those that form clusters: 3 or more residues of the same 'nature' that have their Ca at less than 10A distance.
4
Interactive Visualization
Enjoy the results and explore them with an interactive 3D model and some basic visualization options.
Want to learn more about the science behind enzyme immobilization?
Want to take your enzyme immobilization to the next level?
CapiPy is just the first tool we developed, and at inSEIT we have advanced much more since then. Get in touch to discover our latest tools and how we can help in your immobilization projects!